PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978271.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 239aa MW: 27813.3 Da PI: 7.5818

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978271.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.9e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l +++++G +W++ + + g+ R++k+c++rw +yl XP_024978271.1 14 KGAWSVEEDRKLTAYIQKYGIWNWSKMPPYAGLLRSGKSCRLRWMNYL 61 79****************99******99**********97 PP
2	Myb_DNA-binding	53.1	7.5e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE++ +++++ lG++ W++Ia +++ gRt++++k++w++ XP_024978271.1 67 RGNFTVEEEKMILHYHSILGNK-WSAIATKLP-GRTDNEIKNHWHT 110 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MKVSKWDMRS GLNKGAWSVE EDRKLTAYIQ KYGIWNWSKM PPYAGLLRSG KSCRLRWMNY 60 LKPNIKRGNF TVEEEKMILH YHSILGNKWS AIATKLPGRT DNEIKNHWHT RIKKQVCHKK 120 QVRHKKQEIE VQLPETKPVD LVTSNHYTES SVESLDHFLS SMSDDHSTSS YIFDTSSRFE 180 SRVEFQTGYN MSSPGTIEDV EGFWQQLCCN NGDFDFDLQS LLEDTCSNES IGCYSLHDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	3e-48	MYB family protein