PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978276.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 119aa    MW: 13409 Da    PI: 8.2727
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113254123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C +C++ F ++  L  H++ H
  XP_024978276.1 32 FSCLYCPRKFYTSQALGGHQNAH 54
                    89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    
MGDEGGLYDF LKMQHPPPHP DHAKQPNHSR LFSCLYCPRK FYTSQALGGH QNAHKRERAA  60
ARRSYIITAA DNHLPPPPTT TYTWFDHAQQ APTTSLPFPP AAQNNNTHAP EDVDLTLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-18C2H2 family protein