PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978277.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 692aa    MW: 77428.2 Da    PI: 5.9272
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978277.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.73.4e-1333256911374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykal..ppsetseknsseelaalklfsevsPil 91 
                     lv+lLl+cAeav+++d+  a+++L +l   +s  gd+mqR+a++fteAL+arla   +++  +++   pp +  + n  e l+++++ ++++P++
  XP_024978277.1 325 LVHLLLACAEAVAKEDFMSARKFLHHLDRVVSLLGDSMQRVASCFTEALKARLAAtlTTKPAASSTpkPPFTPFPPNAMEILKIYQIVYQACPYI 419
                     68****************************************************9432223333331223333334599**************** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+gpp lRiTg+gs    s e+++etg+ L+++A++l+vpfef++ v ++l
  XP_024978277.1 420 KFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGPPFLRITGIGS----SPESVRETGRCLSELAQSLHVPFEFHP-VGEQL 509
                     **********************************************************....9**************************.7**** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     edle+++++ + gEalaVn+v +l+r++   ++l +    +L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +
  XP_024978277.1 510 EDLEPHMFNRRVGEALAVNSVNRLQRVP--GHCLGN----LLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSPQ 598
                     ***************************9..666667....******************************************************* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r+kvE+ ++++ei+n+vacegaer++rhe+lekWr+ +e  GFk vplse+a++q k ll+ ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  XP_024978277.1 599 RAKVEQYIFAPEIRNIVACEGAERVMRHERLEKWRKIMEGKGFKGVPLSENAVTQSKILLSLYSCDGYRLTEDRGCLLLGWQDRSILAASAWR 691
                     ********************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    
MGTSSSLKND MNSLITESQC LKLQPTSPHH DHTTKKTPSS SHLQHMMMMN TTTTTTTTLT  60
PSSLTFPTTT TSLKYEEEEE EEQPQQDHHI IHAPRDMDIQ SPDTNSLWES FFSEQLDAAD  120
FMISSPLLAQ PSNNYSFNPH AAAAAAAASF NNNNSNKPKG MSPLQRVFSN SPNNQFMQVE  180
TISLPALENF LDDFDGDDHD FLSYSTTTHT ASDQSYDSLT TIPALLDCLT LPSPSRFYAD  240
HDHPTTTTTT TTAQTQLHGD QMYHQMPPAN APLLEQLEQE RRQEKQHHRQ HPRPSPLQPQ  300
PIISHNHLMV PPPVGPEEHD SGLQLVHLLL ACAEAVAKED FMSARKFLHH LDRVVSLLGD  360
SMQRVASCFT EALKARLAAT LTTKPAASST PKPPFTPFPP NAMEILKIYQ IVYQACPYIK  420
FAHFTANQAI FEAFEAEERV HVIDLDILQG YQWPAFMQAL AARPGGPPFL RITGIGSSPE  480
SVRETGRCLS ELAQSLHVPF EFHPVGEQLE DLEPHMFNRR VGEALAVNSV NRLQRVPGHC  540
LGNLLAMIRD QAPNIVTIVE QEASHNGPYF LGRFLEALHY YSAIFDSLDA TFPADSPQRA  600
KVEQYIFAPE IRNIVACEGA ERVMRHERLE KWRKIMEGKG FKGVPLSENA VTQSKILLSL  660
YSCDGYRLTE DRGCLLLGWQ DRSILAASAW RC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-95GRAS family protein