PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978278.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 234aa MW: 25457.5 Da PI: 8.2792

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.6	3.2e-36	22	206	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLl qa+p+i+++tgt++++as+ +a++s ++ g XP_024978278.1 22 PPKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLHQAEPSIIAATGTGTIPASALaSASASAPPSH----Glsismgl 112 589*************************************************************9999966622222222222....12244566 PP TCP 89 .............................................................................................k 89 + XP_024978278.1 113 qhelgggrtswpmvgpiwpttgfgfpsssnslgmensnynmqkiafdlpaagcnnlisfynhqheqlppglelglsqdarievfsqealnqmdH 206 6666677777777777777777777766666777766666777777777777776666666655555555555555555555555555433221 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MADKPPSEIQ IAIAKNKQQL LPPKRTSNKD RHTKVEGRGR RIRMPALCAA RIFQLTRELG 60 HKSDGETIQW LLHQAEPSII AATGTGTIPA SALASASASA PPSHGLSISM GLQHELGGGR 120 TSWPMVGPIW PTTGFGFPSS SNSLGMENSN YNMQKIAFDL PAAGCNNLIS FYNHQHEQLP 180 PGLELGLSQD ARIEVFSQEA LNQMDHQARM QQQQQQQQQQ QQSSKDDSQG SGGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-54	TCP family protein