PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978287.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 191aa    MW: 22271.3 Da    PI: 8.9365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ ar  g++Rt+k+c++rw++yl
   XP_024978287.1 16 KGPWTMEEDLILINYIADHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding57.72.7e-1869112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l++++++++G++ W++Ia++++ gRt++++k++w++
   XP_024978287.1  69 RGNITPEEQLLIIELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 112
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MEKKPNVCMQ DVQVRKGPWT MEEDLILINY IADHGEGVWN SLARSAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITPEEQLLI IELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHVKQ  120
TDNVSGQTSS RRNSQTDMIP SQTCNVASQM EFSYHPPCDN IMNFPGPFAT ETNENVWSMD  180
ELWPLQLLHN V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.15e-81MYB family protein