PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978318.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 370aa MW: 42442.7 Da PI: 9.2242

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978318.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.6e-16	64	123	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_024978318.1 64 SKYRGVSRHRWTGRFEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 123 89*****************888855555447***********************98 PP
2	AP2	52.5	1.2e-16	166	217	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_024978318.1 166 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 217 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MAMMAVKLEE NSRRRSITMV NHEAPEERCV KRRRRDVGAL ALDCKNEPIL ETGQGSPTTV 60 KRSSKYRGVS RHRWTGRFEA HLWDKLSWNV TQKKKGKQVY LGAYDEEESA ARAYDLAALK 120 YWGPTTFTNF HVSNYEKEIE IMEDLTKEEY LASLRRKSSG FSRGVSKYRG VARHHHNGRW 180 EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFELSTYI TWLKPIAKTP 240 LVSHVSQTYI KSNMMSSNTF KEPQTPFLES HDFVAEGQRS YGKQKSPETK LPFSPSQKSS 300 QTALGLLLRS SMFRELVEKN VNSSNEDERE DIKTQMAISC GGTDDSIEFL DSLNAINARF 360 EGDFDFSYEF

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MAMMAVKLEE NSRRRSITMV NHEAPEERCV KRRRRDVGAL ALDCKNEPIL ETGQGSPTTV  60
KRSSKYRGVS RHRWTGRFEA HLWDKLSWNV TQKKKGKQVY LGAYDEEESA ARAYDLAALK  120
YWGPTTFTNF HVSNYEKEIE IMEDLTKEEY LASLRRKSSG FSRGVSKYRG VARHHHNGRW  180
EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFELSTYI TWLKPIAKTP  240
LVSHVSQTYI KSNMMSSNTF KEPQTPFLES HDFVAEGQRS YGKQKSPETK LPFSPSQKSS  300
QTALGLLLRS SMFRELVEKN VNSSNEDERE DIKTQMAISC GGTDDSIEFL DSLNAINARF  360
EGDFDFSYEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	35	RRRSITMVNHEAPEERCVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	6e-95	AP2 family protein