PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978322.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 111aa MW: 12737.8 Da PI: 9.3111

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.8	1e-39	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+ rr+C++dCv+apyfp ++p++f ++h+++Gasn+ k+l+ lp + r da++sl+yeA++r+++PvyG+vg+i++l++q++ ++++la XP_024978322.1 5 RCAVCKYFRRRCPSDCVFAPYFPPDNPQRFTCLHRIYGASNIGKMLEGLPMHLRVDAVDSLYYEAKWRIQEPVYGCVGIISSLHRQIHIAQSQLA 99 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_024978322.1 100 KARAE 104 99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence
MNSTRCAVCK YFRRRCPSDC VFAPYFPPDN PQRFTCLHRI YGASNIGKML EGLPMHLRVD 60 AVDSLYYEAK WRIQEPVYGC VGIISSLHRQ IHIAQSQLAK ARAETAFLRV S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	7e-50	LBD family protein