PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978348.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 316aa    MW: 36347.1 Da    PI: 9.6613
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.52.8e-391042513133
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.............eaesssssasn 84 
                      kk  hski+T++g+RdRRvR s+e+a +fF Lqd LGfdk+skt++WLl+++ paikel + + + +s++             + +s+  s+++
  XP_024978348.1 104 FKKHGHSKICTARGPRDRRVRFSIEVAQKFFCLQDLLGFDKASKTLDWLLTNSMPAIKELIEETGDCSSSTvnhpyklkfleaiNGGSDDLSDGK 198
                     6999*********************************************************9955555333332223222333333333333333 PP

             TCP  85 sssg...kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                     ++++   k+ + ++ k++++ k   +++   ++sra+arararertrekmr k
  XP_024978348.1 199 KKNSvlpKRVAGKKkKTRRKCKTGFQVNVTRDQSRAEARARARERTREKMRVK 251
                     33337764444444255555555555555566******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MFSSNPLGYL PNSFYDHEKD DFHFNYHQRN HGDPFISGEC FFHASNSTAL PPPIMENATT  60
IKQDFVGQQQ QQQFSERSGL QNCDYRDDLL DPVISRHKKK IGTFKKHGHS KICTARGPRD  120
RRVRFSIEVA QKFFCLQDLL GFDKASKTLD WLLTNSMPAI KELIEETGDC SSSTVNHPYK  180
LKFLEAINGG SDDLSDGKKK NSVLPKRVAG KKKKTRRKCK TGFQVNVTRD QSRAEARARA  240
RERTREKMRV KKLGDDLKTL APDGCEYYEV SPSNLILKSD YWREIEPQID YKNIRWKCIM  300
GSETSQQSKD SSFTNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198214KKKNSVLPKRVAGKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-22TCP family protein