PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978351.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 332aa    MW: 37813.6 Da    PI: 8.5431
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978351.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.34.6e-371252612134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas...nsssg..... 88 
                     +++kd h ki T++g+RdRRvR s+++a +fF Lqd LGfd++skt++WLl+++ +aikel++ +++++s+    s+++  +       +     
  XP_024978351.1 125 TTRKDGHRKINTAQGPRDRRVRFSIQIAQKFFGLQDLLGFDRASKTLDWLLTNSVTAIKELVEETNQASSDE---SRQKFLEtiiG---Kkesvi 213
                     78**************************************************************88888444...22222222221...033344 PP

             TCP  89 ..kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                          k++++++k ++    ++n a+ +sra+arararertr km  k+
  XP_024978351.1 214 kcGDGKKKKTRQKCTAGCG-VNNAARdQSRAEARARARERTRAKMLVKK 261
                     4433333333334444444.3444446******************9884 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MVENGKYDRP ATQAVIFGWN GHEIYTMFSH INALSLPISP FFDLEKDGVY FNHHGHKSKL  60
FVSGDLFFNA YNNTAPPPPP PVMQNVTTIS QDFLESSGLP NCEEYGHDDL LDSVVSRYKK  120
KMVATTRKDG HRKINTAQGP RDRRVRFSIQ IAQKFFGLQD LLGFDRASKT LDWLLTNSVT  180
AIKELVEETN QASSDESRQK FLETIIGKKE SVIKCGDGKK KKTRQKCTAG CGVNNAARDQ  240
SRAEARARAR ERTRAKMLVK KLDDDDLVPD SKLSLMDSGG CWSEIDQPQS DYKNLRWECI  300
MDQEQMSRQS KDSSSLYTSL YQNLEYYFMS SR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227KKTRQKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-24TCP family protein