PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978353.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 128aa MW: 14325.6 Da PI: 9.6958

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	46.6	1.3e-14	2	110	14	123
TCP 14 kvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg...kaaksaakskksqk 102 ++g d RvRls+++a +fF Lqd LGfdk+skt++ + i el++ +++++s+ + + +++ + +++k++++ k XP_024978353.1 2 AKGTGDPRVRLSIDIAPKFFWLQDFLGFDKASKTLDCVI-----FIRELVEETNQASSDEskmKFLETIIGKKE---SvveCVDGKKMKTRRKCK 88 678889*****************************9865.....577777776655533311122222222222...133222222234444445 PP TCP 103 saasalnlak.esrakararar 123 ++n a+ +sra+arara+ XP_024978353.1 89 AGFGVNNAARdQSRAEARARAK 110 5555555555588888888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence
MAKGTGDPRV RLSIDIAPKF FWLQDFLGFD KASKTLDCVI FIRELVEETN QASSDESKMK 60 FLETIIGKKE SVVECVDGKK MKTRRKCKAG FGVNNAARDQ SRAEARARAK IGVKKLDDDV 120 ELVPDSKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	7e-12	TCP family protein