PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978354.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 341aa    MW: 38525.2 Da    PI: 8.8526
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.51.4e-391002462135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas.....nsssg. 88 
                     ++kkd hskihT++g+RdRRvRls+e+a++fF Lqd LGfdk+s t++WL+ ++k +i++l++ +  s+s++  +++s++   +     +   + 
  XP_024978354.1 100 TPKKDNHSKIHTAQGPRDRRVRLSIEVARKFFCLQDLLGFDKASTTLDWLFSKSKIEIDKLVKGKKHSSSSStvTDQSEVGFLEtltggS---Dd 191
                     79*************************************************************966665333333333333333444330...03 PP

             TCP  89 ......kaaksaa.kskksqksaasa.lnlakesrakarararertrekmriknk 135
                           k+a++   ++kk++   +++   + ++sra+arararert+ek r++n+
  XP_024978354.1 192 qdkrqkKSAPKYClQGKKKKMTRKHKsGFPVNQSRAEARARARERTQEKLRNRNR 246
                     344433333333323333332333330445559******************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MFPTNSFQQF ASSIHVFPPP DSFLDYEKDG VCINHHYRND NPFVSGDCCF QAFSGSPPTA  60
TEKFATCKQD SFEELQQQYY CEDYHHLFES GVSPTKKKKT PKKDNHSKIH TAQGPRDRRV  120
RLSIEVARKF FCLQDLLGFD KASTTLDWLF SKSKIEIDKL VKGKKHSSSS STVTDQSEVG  180
FLETLTGGSD DQDKRQKKSA PKYCLQGKKK KMTRKHKSGF PVNQSRAEAR ARARERTQEK  240
LRNRNRMLDN DSKKALGGPC CPASSPSLTV LQPSFWSAIE SENEYNDRIA ELITAQKISM  300
PSSMLCCYQH NLTVSNNSSS TFTSLPDFTV VHEQQGDSVS I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-22TCP family protein