PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978361.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 246aa    MW: 28631.8 Da    PI: 6.8819
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-1817107199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk  +p++ +++  l +p  f+ ++ ++   + + +l ++  +sWev +  +k ++ +++++GW+eFv++n L  gDf++F+++g s+f  +v+
  XP_024978361.1  17 FFKFYMPAHCSTQ--LQIPPAFV-NYFKD-YLPLKFVLVTSGKKSWEVDM--NKVDDDVYFKRGWEEFVQDNSLTFGDFLMFYYNGGSKF--FVS 103
                     7788877766665..9*******.56333.47889***************..********************************998888..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     vf +
  XP_024978361.1 104 VFGN 107
                     9975 PP
2B347.92.4e-15157231787
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     +  + ++g++ +pk f ++ ++   ++  +   + sgr+W+vk+  + +s+ry +tkGWk+Fv +n +  gD++ Fk+++ 
  XP_024978361.1 157 QRTYINKGCVHMPKVFYDRVKKF--RP--IAKLQHSGRTWDVKV--SISSERYGFTKGWKKFVTENCVAIGDICCFKMIDI 231
                     44555556688899988777533..33..444556*********..*******************************8763 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MEEHQIGGSN CEQLPQFFKF YMPAHCSTQL QIPPAFVNYF KDYLPLKFVL VTSGKKSWEV  60
DMNKVDDDVY FKRGWEEFVQ DNSLTFGDFL MFYYNGGSKF FVSVFGNNNC LKEIEVLNNQ  120
SEQQPTCIQL GDEANRTGET KIISVEDTDL SFEVTLQRTY INKGCVHMPK VFYDRVKKFR  180
PIAKLQHSGR TWDVKVSISS ERYGFTKGWK KFVTENCVAI GDICCFKMID IKPKFYLLDV  240
SFSREI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-22B3 family protein