PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978369.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 184aa    MW: 20330.1 Da    PI: 8.9246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.7e-1592140355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV  ++ +g+W+Ae ++p   gk+ r +lg+f taeeAa+a++ a  +++g
  XP_024978369.1  92 YRGVNLRP-SGKWAAEMMVP---GKKERKWLGTFTTAEEAARAYDIASVRFRG 140
                     9*******.7*********8...557*********************998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MDNFSVTSTT AGVRMDDEDS IIVSALRYVI SGGNTTAPSG VIGKYYCIQP PPPEKEICRE  60
CGMQIPDCLG CQMFTAAGGG GERRRKKRKK EYRGVNLRPS GKWAAEMMVP GKKERKWLGT  120
FTTAEEAARA YDIASVRFRG KTAKTNFPVA EYSDIVPVEN EEENANSVNG LYLNPIYQSK  180
LNKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388RRRKKR
28389RRRKKRK
38391RRRKKRKKE
483116RRRKKRKKEYRGVNLRPSGKWAAEMMVPGKKERK
58490RRRKKRK
68492RRRKKRKKE
78591RKKRKKE
88690KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.15e-21ERF family protein