PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978506.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 239aa MW: 28163.6 Da PI: 6.8897

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978506.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.3e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll+++v+++G g+W+++a++ g++R +k+c++rw +yl XP_024978506.1 16 KGPWTPGEDKLLAEYVAMHGEGRWSSVASCSGLKRNGKSCRLRWVNYL 63 79********************************************97 PP
2	Myb_DNA-binding	49.6	8.9e-16	70	113	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g +++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ XP_024978506.1 70 GHLSPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 113 56699**************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MTEMMSWRMQ EEGWRKGPWT PGEDKLLAEY VAMHGEGRWS SVASCSGLKR NGKSCRLRWV 60 NYLRPGLKKG HLSPQEEGII IELHALWGNK WSTIARYLPG RTDNEIKNYW RTHFKKKEKP 120 LENQKKRKYE VQLNHNQEHQ RGPEIMNDNT TLPYAEEIDR GLFTESSQTT LQETNQMIIN 180 DQQQQQNPSV MAQDVARWWD TVSEDGLWSR FLWNNLDSDH PNQAVMEQPF QMLDSLSMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	1e-61	MYB family protein