PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978531.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 268aa    MW: 29391.9 Da    PI: 6.5122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83.1e-16134180455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  XP_024978531.1 134 VHNLSEKRRRSRINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 180
                     6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MANLYDASAI CSSYSPPPEP SDDISLLLRQ ILFKSSSSSS SPSPSLIPKQ VQCEIQRQPP  60
PPHSSIPTYS SAAAANVPAN GVAHVSSSSA GTIDYDPDEY DCESEEGFEN LMEEMAAKRN  120
PPRNPSKRTR AAEVHNLSEK RRRSRINEKM KALQKLIPNS NKTDKASMLD EAIEYLKQLQ  180
LQVQMLTMRN GINLYSMSAP SGVHEQDQRT GGLNQGNPPA NMTVNQERLM NPMLSLPVPC  240
TGQNQPLVLD FSHSVNHEPT FGTQRGSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-43bHLH family protein