PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978591.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 142aa MW: 16335.9 Da PI: 10.7902

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978591.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.8	9e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri++++ rqvtfskRrng+lKKA+E+ +LCda+v i+fsstgkl e+ss XP_024978591.1 10 RIDDTTSRQVTFSKRRNGLLKKAKEIAILCDAQVGAIVFSSTGKLSEFSS 59 8***********************************************96 PP
2	K-box	47.6	7.3e-17	81	141	9	69
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + ++ + +q e+a Lk+++e+Lq+++R+ +G++L+++ +++Lq+Le +Le+ l++iR kK XP_024978591.1 81 NPMSEVKLWQMEVAVLKQKLETLQETHRQGMGNELSNMGVEDLQRLEIRLETNLRNIRLKK 141 56678899**************************************************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence
MARGKITIRR IDDTTSRQVT FSKRRNGLLK KAKEIAILCD AQVGAIVFSS TGKLSEFSST 60 SMKSVIQRYN RTQEENNQLL NPMSEVKLWQ MEVAVLKQKL ETLQETHRQG MGNELSNMGV 120 EDLQRLEIRL ETNLRNIRLK KV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	9e-65	MIKC_MADS family protein