PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978595.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 260aa    MW: 29749.2 Da    PI: 5.8333
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978595.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-1864117356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  XP_024978595.1  64 KKRRLNLEQVKALEKSFELGNKLEPERKRQLARVLGLQPRQVAIWFQNRRARWK 117
                     4557899**********************************************9 PP
2HD-ZIP_I/II129.21.6e-4163154192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqvk+LE+sFe  +kLeperK +lar Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++d++k++n++L++++++L+++l 
  XP_024978595.1  63 EKKRRLNLEQVKALEKSFELGNKLEPERKRQLARVLGLQPRQVAIWFQNRRARWKTKQLEKDYNVLKRHFDSIKADNDALKNQNNKLHAQLV 154
                     69**************************************************************************************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MSFLPPEPMF FGYELDHHHH PHHFQGVEPL MMRRSMSYSG REAEEMNAGD GETSEDEGCQ  60
LGEKKRRLNL EQVKALEKSF ELGNKLEPER KRQLARVLGL QPRQVAIWFQ NRRARWKTKQ  120
LEKDYNVLKR HFDSIKADND ALKNQNNKLH AQLVALKSGE PNGVRAMVNL NKETEGSWSN  180
GSDNSCEDNN TIFYTQISNN SSMIGGGLTP PYLLGQPLNQ EAVAGDHEGF CTNMLNVMED  240
QQPAAFWPWP ESEQQQQPEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.17e-67HD-ZIP family protein