PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978669.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 88aa    MW: 10007.3 Da    PI: 8.5215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.54.3e-0715551454
                    HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    d+i + +++L++llP+ + + +s K s + +L+++++Y++sL
  XP_024978669.1 15 DQIIQLLSKLQQLLPEiR-NRRSNKASASKVLQETCNYVRSL 55
                    5677899*********77.899999***************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    
MSSRRSREAP RITDDQIIQL LSKLQQLLPE IRNRRSNKAS ASKVLQETCN YVRSLHQEVD  60
DLSDRLSQLL STVDANSPEA SIIQSLIM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.15e-22bHLH family protein