PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978779.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 324aa MW: 36117.9 Da PI: 6.8248

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	77.6	1.4e-24	120	180	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqKe+ s++pr YYrCt++ gC+++k+v++ ++ + ++itY g+H+++ XP_024978779.1 120 DDGYAWRKYGQKEILHSKHPRCYYRCTHKpvyGCKAQKQVQKLEDGSNRFHITYFGQHTCP 180 8*************************9999********99***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MEKNKRRLTE TLIRGQDSAK RLQKLLPRRE NDDGSDSAYC LVMEILGSFS GGLLLLDGCD 60 SGEFSGVPAS PHVGNLASSV DQTPEVHSGK KPAAAVKERR GCYKRRKTID SRVKINDTAD 120 DGYAWRKYGQ KEILHSKHPR CYYRCTHKPV YGCKAQKQVQ KLEDGSNRFH ITYFGQHTCP 180 SPNAFSHSPL VLDFNDSKND HYFSNSPSTI TNIHNEPSVK HEVESKAQSI DVSDTISSAN 240 DDRSSPVLGW DEILGYGHGH GHGHGHEAAI SFVGFDHEDS SVTTSSHDHF RMDFLNTGSY 300 LNDLFLDETL SEVNLMSGAF PRFD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	131	KRRKTIDSRVKINDTADDGYAWRKYGQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40750.1	4e-29	WRKY family protein