PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978817.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 213aa    MW: 23667.4 Da    PI: 9.8314
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978817.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.4e-09104144954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  XP_024978817.1 104 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAVHYMKFL 144
                     699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MEMMTTMMME LDKLPNPFSL PFQHLNHPTY PTPESPAIPP PQFRVSHDFP RPSWLQQKPD  60
SVEAMREMIF RMAALQPIQI DPESVKPPKR RNVKISKDPQ SVAARHRRER ISERIRILQR  120
LVPGGTKMDT ASMLDEAVHY MKFLKKQVQS LEQAAAAAAG GGGTTTGISN VAGFCSPTTA  180
MNHHHGGVNY ANVIRACGEP AADQMVGSME LLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.17e-39bHLH family protein