PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979013.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 784aa MW: 87273.1 Da PI: 7.1286

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.7e-08	47	89	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I ++++ + q++++++ + XP_024979013.1 47 AWTRQEEESFFNALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 89 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence
MTMESQIPYR EVSDLPENVF IKDVITSETH HVASNQPAKK QTRQWAAWTR QEEESFFNAL 60 RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPE LSLDAKNSKD TNAAMLRWWS 120 LLEKHSCKAS KLHLKPRRFK IFLETLEHQL LKDRKKNIRK RPFNGENCSI TPSHAVSNQG 180 RPCAHDARIN LVLIDSQSTQ NLGSGKGSSL RRNASTCLDR NNCKGDLSPV KPARQRRRAG 240 TASTAAYKRW EKAAIAGVSL VADAAAHLEQ TSLDKLVDSV QYMQGEKGLD PVAKDMPCIP 300 SFHQNMFSGT SIQHSMKLKL QLFPVDESIR RALEMDNHNP HLELTLSSRK KISSVLEHMN 360 RKWGSSSIAS GELTLLPYYA QSSNLMSCQK WTQDSILSAA DVYAALGSPP VFRLRYGWFA 420 NADCRYVPLQ GPLTTHAAQR INMNGVEVQN VDLTKCSQPP ECSMVPQDTC TIPGACNSGK 480 SLDHDDKLVS AGKVNTLTAS SSNLPDKPIE CVDVGVSKNF PEGFDHASGM SWQRRDTRNG 540 AFSRRLGHMD KGSHKNAALS ILEWADSLTN ISVSDLLLDA SHNINPLPPG SQCLQQIPFS 600 CDSFDAAIAA HVSKNLNSNT VEPTIVSSIW DAEETCDAFT FRKNNDLSEK THTSKENCKQ 660 DTSTSLVPSG SAIEKLVEAE EPMEDHPAEA HSMDECQLSD GNPEDGSAKD LRTLTDMYWP 720 ESLGPLEVDV APCRYQSDDL ILSDGLSRIL SSSLDAFQNF SLFGLEQQRE GGSIEDDKIH 780 DSRV

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence

MTMESQIPYR EVSDLPENVF IKDVITSETH HVASNQPAKK QTRQWAAWTR QEEESFFNAL  60
RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPE LSLDAKNSKD TNAAMLRWWS  120
LLEKHSCKAS KLHLKPRRFK IFLETLEHQL LKDRKKNIRK RPFNGENCSI TPSHAVSNQG  180
RPCAHDARIN LVLIDSQSTQ NLGSGKGSSL RRNASTCLDR NNCKGDLSPV KPARQRRRAG  240
TASTAAYKRW EKAAIAGVSL VADAAAHLEQ TSLDKLVDSV QYMQGEKGLD PVAKDMPCIP  300
SFHQNMFSGT SIQHSMKLKL QLFPVDESIR RALEMDNHNP HLELTLSSRK KISSVLEHMN  360
RKWGSSSIAS GELTLLPYYA QSSNLMSCQK WTQDSILSAA DVYAALGSPP VFRLRYGWFA  420
NADCRYVPLQ GPLTTHAAQR INMNGVEVQN VDLTKCSQPP ECSMVPQDTC TIPGACNSGK  480
SLDHDDKLVS AGKVNTLTAS SSNLPDKPIE CVDVGVSKNF PEGFDHASGM SWQRRDTRNG  540
AFSRRLGHMD KGSHKNAALS ILEWADSLTN ISVSDLLLDA SHNINPLPPG SQCLQQIPFS  600
CDSFDAAIAA HVSKNLNSNT VEPTIVSSIW DAEETCDAFT FRKNNDLSEK THTSKENCKQ  660
DTSTSLVPSG SAIEKLVEAE EPMEDHPAEA HSMDECQLSD GNPEDGSAKD LRTLTDMYWP  720
ESLGPLEVDV APCRYQSDDL ILSDGLSRIL SSSLDAFQNF SLFGLEQQRE GGSIEDDKIH  780
DSRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.2	0.0	MYB_related family protein