PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979019.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 746aa MW: 83082.3 Da PI: 7.118

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.4	1.6e-08	47	89	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I ++++ + q++++++ + XP_024979019.1 47 AWTRQEEESFFNALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 89 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence
MTMESQIPYR EVSDLPENVF IKDVITSETH HVASNQPAKK QTRQWAAWTR QEEESFFNAL 60 RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPE LSLDAKNSKD TNAAMLRWWS 120 LLEKHSCKAS KLHLKPRRFK IFLETLEHQL LKDRKKNIRK RPFNGENCSI TPSHAVSNQG 180 RPCAHDARIN LVLIDSQSTQ NLGSGKGSSL RRNASTCLDR NNCKGDLSPV KPARQRRRAG 240 TASTAAYKRW EKAAIAGVSL VADAAAHLEQ TSLDKLVDSV QYMQGEKGLD PVAKDMPCIP 300 SFHQNMFSGT SIQHSMKLKL QLFPVDESIR RALEMDNHNP HLELTLSSRK KISSVLEHMN 360 RKWGSSSIAS GELTLLPYYA QSSNLMSCQK WTQDSILSAA DVYAALGSPP VFRLRYGWFA 420 NADCSMVPQD TCTIPGACNS GKSLDHDDKL VSAGKVNTLT ASSSNLPDKP IECVDVGVSK 480 NFPEGFDHAS GMSWQRRDTR NGAFSRRLGH MDKGSHKNAA LSILEWADSL TNISVSDLLL 540 DASHNINPLP PGSQCLQQIP FSCDSFDAAI AAHVSKNLNS NTVEPTIVSS IWDAEETCDA 600 FTFRKNNDLS EKTHTSKENC KQDTSTSLVP SGSAIEKLVE AEEPMEDHPA EAHSMDECQL 660 SDGNPEDGSA KDLRTLTDMY WPESLGPLEV DVAPCRYQSD DLILSDGLSR ILSSSLDAFQ 720 NFSLFGLEQQ REGGSIEDDK IHDSRV

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence

MTMESQIPYR EVSDLPENVF IKDVITSETH HVASNQPAKK QTRQWAAWTR QEEESFFNAL  60
RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPE LSLDAKNSKD TNAAMLRWWS  120
LLEKHSCKAS KLHLKPRRFK IFLETLEHQL LKDRKKNIRK RPFNGENCSI TPSHAVSNQG  180
RPCAHDARIN LVLIDSQSTQ NLGSGKGSSL RRNASTCLDR NNCKGDLSPV KPARQRRRAG  240
TASTAAYKRW EKAAIAGVSL VADAAAHLEQ TSLDKLVDSV QYMQGEKGLD PVAKDMPCIP  300
SFHQNMFSGT SIQHSMKLKL QLFPVDESIR RALEMDNHNP HLELTLSSRK KISSVLEHMN  360
RKWGSSSIAS GELTLLPYYA QSSNLMSCQK WTQDSILSAA DVYAALGSPP VFRLRYGWFA  420
NADCSMVPQD TCTIPGACNS GKSLDHDDKL VSAGKVNTLT ASSSNLPDKP IECVDVGVSK  480
NFPEGFDHAS GMSWQRRDTR NGAFSRRLGH MDKGSHKNAA LSILEWADSL TNISVSDLLL  540
DASHNINPLP PGSQCLQQIP FSCDSFDAAI AAHVSKNLNS NTVEPTIVSS IWDAEETCDA  600
FTFRKNNDLS EKTHTSKENC KQDTSTSLVP SGSAIEKLVE AEEPMEDHPA EAHSMDECQL  660
SDGNPEDGSA KDLRTLTDMY WPESLGPLEV DVAPCRYQSD DLILSDGLSR ILSSSLDAFQ  720
NFSLFGLEQQ REGGSIEDDK IHDSRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.2	0.0	MYB_related family protein