PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979084.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 252aa    MW: 28144.3 Da    PI: 8.099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-114894755
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     rEr R +++ + ++ Lr llP+ +   + +K +Ka+i++ A+e Ik L+
  XP_024979084.1 48 SRERGRTRKMAKLYADLRALLPNlP---TEPKADKATIVKAAMESIKFLE 94
                    59*********************66...*******************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MAKAAVSNDG GVVQKLTKGK GVMIDGENAD QGAEIMDHKR LKHEIRVSRE RGRTRKMAKL  60
YADLRALLPN LPTEPKADKA TIVKAAMESI KFLEQTLQNL QKQKVERLQG HVPNDATAVV  120
PTVPSQNPVI NNNGDEPLLV NQQQQQQQGS LNVFETWTSP NVTISMCGTD AHISICSLKK  180
PGLFTTICFI LKNHNHDIVS AQISSDDAKT MYMIHVRANV PPEFAEGFPY EEMYKKAVEQ  240
IVLWINFEKL EN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.16e-32bHLH family protein