PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979087.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family AP2
Protein Properties Length: 686aa    MW: 76579 Da    PI: 8.3454
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18129178255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa+a+++a+ +++g
  XP_024979087.1 129 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFVTAESAARAYDRAAIEFRG 178
                     59*******.**********94....36************************998 PP
2AP260.15.1e-19346395255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa+a+++a+ +++g
  XP_024979087.1 346 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAESAARAYDRAAIEFRG 395
                     59*******.**********94....36************************998 PP
3AP258.22e-18575624255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W++eIrdp+    r +r++lg+f tae Aa+a+++a+ +++g
  XP_024979087.1 575 NYRGVRQRP-WGKWASEIRDPR----RaARVWLGTFETAELAARAYDRAAIEFRG 624
                     59*******.**********82....48************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    
MESFIHKLNE EATTAIHHQP PPWRRITDVE ETSIMVAALK NVIGCTDYTT VDQRQNYDFR  60
SFSPMDYQAA GSGGEIVDSL LAVPLPQICP VCGITGCLGC NYFTDDMKLN DGCGGGGGAG  120
GPIKKKKKNY RGVRQRPWGK WAAEIRDPRK AARVWLGTFV TAESAARAYD RAAIEFRGAR  180
AKLNFPLADY TTTPPSMAES QQPAPSSTRT KPERSNGGKK PSVEKGVMEA TAERSSEEWM  240
RMMTDFNGDF HDSTQIGNGE FPDWIWDEQW GSSNVDQQQR YDFRSFYTSD YAAAGSEPVE  300
YLPEVLLSQT CPFCRISGCL GCNYFMDDME QNDGGSGGPI KKKKKNYRGV RQRPWGKWAA  360
EIRDPRKAAR VWLGTFETAE SAARAYDRAA IEFRGTTAKL NFPLADYATP PSHVDILSTR  420
IYIYIYISPL TFSSFFNELQ TQNQRTNTKV YQKYYQQQSL MPPPFQPSPR FTKDEETSIM  480
VAALKNVIVG CTDSTTFDQR QNHVFRSSSP FDSAAAGGSG SERVITSSPV TFPQSCSVCG  540
ISGCLGCNYF MITDAMKMKD VRGGGGGPIK RKKKNYRGVR QRPWGKWASE IRDPRRAARV  600
WLGTFETAEL AARAYDRAAI EFRGARAKLN FPLSDYTTPP SSMPEIQARR EGETSGGKKA  660
IEENDGEEWM RIMTDFGGFT DDDHTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-30ERF family protein