PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979098.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family SRS
Protein Properties Length: 190aa    MW: 21359.5 Da    PI: 6.2679
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702146.52.2e-4511426155
          DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                     ++Cq+CGn+ak+dC + RCR CCk rgf+C+thvkstW pa+ ++++ ++  ++   + +++++++++++ ++  +  s++s +           
  XP_024979098.1   1 MRCQECGNKAKRDCLYYRCRSCCKGRGFECETHVKSTWAPASSTKHQVSADYST---HISHHHQEEEEQHGQQ-LHLPSSSSDMC-------VCA 84 
                     58*****************************************99954333332...2222222222222222.12222222232.......233 PP

          DUF702 101 etsslPeevsseavfrcvrvssvddge...eelaYqtavsigGhvfkGiLydqGleek 155
                        ++P+++  e+ f cvrv+s ++++   +++aY+t+++igGhvfkGiLydqG++++
  XP_024979098.1  85 CEGQFPTKMVGESTFTCVRVTSTSEENaivDQYAYETSINIGGHVFKGILYDQGPSHQ 142
                     3456*******************997634479***********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MRCQECGNKA KRDCLYYRCR SCCKGRGFEC ETHVKSTWAP ASSTKHQVSA DYSTHISHHH  60
QEEEEQHGQQ LHLPSSSSDM CVCACEGQFP TKMVGESTFT CVRVTSTSEE NAIVDQYAYE  120
TSINIGGHVF KGILYDQGPS HQMMNFQDRN ADGGDQQNST INIQSDSQPL DKPRPSSPPD  180
FSFDIYPHIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-34SRS family protein