PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979110.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 247aa MW: 28492.6 Da PI: 7.0707

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.2e-18	80	132	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t++q++ Le+ F +++++ e++++L+++lg++ rq+ +W+qN+Ra++k+ XP_024979110.1 80 KRLTEDQVRLLESSFDSTKKLEPERKQQLSRQLGIPPRQIAIWYQNKRARWKN 132 578************************************************95 PP
2	HD-ZIP_I/II	107.3	1.1e-34	79	169	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +rl+++qv+lLE+sF++++kLeperK++l+r+Lg+ prq+a+W+qn+RAR+k++ lE+dy++L+ +++a e+++L+keve+Lr+el++ XP_024979110.1 79 TKRLTEDQVRLLESSFDSTKKLEPERKQQLSRQLGIPPRQIAIWYQNKRARWKNQSLEHDYSMLQLQLQATLLETRHLQKEVEHLRAELNK 169 58*************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MDDDENLGKR EXKLASQHLD THQTVGPDPL SINRNSPLSY SYPPSTTPIS SSLLELESNH 60 TTMNNFHNQK TISPHRHTTK RLTEDQVRLL ESSFDSTKKL EPERKQQLSR QLGIPPRQIA 120 IWYQNKRARW KNQSLEHDYS MLQLQLQATL LETRHLQKEV EHLRAELNKV RGEQLARNYK 180 YQRPPPVDSS FSRCGEDVGS SSRSLENDHV DNLYCYGEQV FQVEEMYAAA CMMGADLGLF 240 GSKTNLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-26	HD-ZIP family protein