PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979127.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 529aa MW: 57431.4 Da PI: 6.7924

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979127.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	286	344	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg+++pr+YYrCt++ gCpv+k+v+r+aed++++++tYeg+Hnh+ XP_024979127.1 286 TDGCQWRKYGQKIAKGNPCPRAYYRCTMSvGCPVRKQVQRCAEDQTILITTYEGNHNHP 344 7**************************9**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MATPSTGFSF DSDRITFSDH HQPEFMDFTG HNSSGSPSST TIHFPLNCTY HQPGKSDDKR 60 INEVDFFTEN THNLSKSIGS SVSCVQYQES TEPTMDLDFH INTGLHLVTG YTDSDQSVID 120 DGVSPNSGDK RTKHELATVQ AELERMNDEN QRLREALNQV MVNCNTLEMH LATMIQQNQG 180 DEKGGSTVPK RSMDLALAAP RMAEADENSE SSSAERRRDE HSRSPINNNG VINGEVSPKQ 240 GSHVLQRLNS LNDNNRNTGN VDKSNEGTIQ KARVSVRVRS EASVITDGCQ WRKYGQKIAK 300 GNPCPRAYYR CTMSVGCPVR KQVQRCAEDQ TILITTYEGN HNHPLPHTAI AMASTTSSAA 360 KMLLSGSMPS SDGLMNSNFL GRNLHNYSSS MATISASSPF PTVTLDLTQT PNLLQFHRTT 420 GQFPVPFSIP NQLPQIFGQS LYNHSKFSGL QMSHNMETAG RLPPAALADT VTALTADPNF 480 PAAVAAAISS IIGSGSHGKD KSGNVNGTNI NQNGHGNNKV SNSGFGGNQ

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MATPSTGFSF DSDRITFSDH HQPEFMDFTG HNSSGSPSST TIHFPLNCTY HQPGKSDDKR  60
INEVDFFTEN THNLSKSIGS SVSCVQYQES TEPTMDLDFH INTGLHLVTG YTDSDQSVID  120
DGVSPNSGDK RTKHELATVQ AELERMNDEN QRLREALNQV MVNCNTLEMH LATMIQQNQG  180
DEKGGSTVPK RSMDLALAAP RMAEADENSE SSSAERRRDE HSRSPINNNG VINGEVSPKQ  240
GSHVLQRLNS LNDNNRNTGN VDKSNEGTIQ KARVSVRVRS EASVITDGCQ WRKYGQKIAK  300
GNPCPRAYYR CTMSVGCPVR KQVQRCAEDQ TILITTYEGN HNHPLPHTAI AMASTTSSAA  360
KMLLSGSMPS SDGLMNSNFL GRNLHNYSSS MATISASSPF PTVTLDLTQT PNLLQFHRTT  420
GQFPVPFSIP NQLPQIFGQS LYNHSKFSGL QMSHNMETAG RLPPAALADT VTALTADPNF  480
PAAVAAAISS IIGSGSHGKD KSGNVNGTNI NQNGHGNNKV SNSGFGGNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-83	WRKY family protein