PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979147.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 209aa    MW: 22706.5 Da    PI: 4.7529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-183080155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr p++   + r++lg+f ++e+Aa+a++ a+++++g
  XP_024979147.1 30 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFSSPEMAARAHDVAALSIKG 80
                    68*****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MAKSDQPSDS GIDTTLTRQN GIPAKKTRPP VYRGVRMRSW GKWVSEIRQP RKKSRIWLGT  60
FSSPEMAARA HDVAALSIKG NSAILNFPQL KDLLPRPASI SPRDVQAAAA MAAAMKEFSS  120
SASYPDFSVP PSLASDDHVS GNSADELGEI IELPSLEGWL ESPESSTELV LFDSVDGWMY  180
RPCTAADIDF FPADFSGPVG EDSSFQTII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-49ERF family protein