PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979176.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 280aa    MW: 31051.4 Da    PI: 9.4404
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l  +v+++G+g Wk I +          R+  ++k++w++
   XP_024979176.1  5 KQKWTSEEEEALRAGVAKHGTGKWKNIQKDPEfnhflYSRSNIDLKDKWRN 55
                     79************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV AKHGTGKWKN IQKDPEFNHF LYSRSNIDLK DKWRNMSVSA  60
NGQGPREKSR TPKPKVNTDS PATPLPIAQA PGSSALVVVD PASTDVLMDD SSQCVLDGKT  120
TSKYNAMIYE ALSTLKDPNG SDISAIVSFI EKRHEVPQNF RRLLGSRLRR LVAQEKLEKV  180
QNCYRLRREV LYGTKGPIPK PKEIRPRLSQ VNSYLGGTLE EAAVAAAYKV AEAENKSFVA  240
AEAVKEAERV AKMAEEADAF LQLAKEIYDK CCRGEVVMVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-57MYB_related family protein