PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979249.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 300aa    MW: 32871.7 Da    PI: 10.3
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +v ++G g W+tI +          R+  ++k++w++
   XP_024979249.1  5 KQKWTSEEEAALKAGVLKHGAGKWRTILKDPEfssvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MGAPKQKWTS EEEAALKAGV LKHGAGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNMSVMA  60
NGWGSREKAR LALKRVQHVP KDDNPLALAT VDQSDEDSGD ARPLPSSSGS PQIGGSKRSM  120
IRLDNLIMEA INNLKEPGGS NKTTIGTYIE EQYWAPPNFK RLLSMKLKFL TANGKLVKTK  180
RKYRIASANA LSDKKKIPTM LRLEGRQKVG SPKVDKDEIS VPTKAQIDLE LQKMRSMTPQ  240
EAAAAAAQAV AEAEAAIAEA EEAAREAEAA EADAEAAQAF AEAAMKTLKG RTTQRLMIRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.12e-98MYB_related family protein