PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979344.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 1063aa MW: 119769 Da PI: 6.6857

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.2	4.8e-16	108	211	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++++iyr++++r++lt+GW+ Fv++++L +gD v+F +++ XP_024979344.1 108 FCKTLTASDTSTHGGFSVPRRAAEKIfppxmlcXXXXXXXXXXXXXXXXXXXXTFRHIYRGQPKRHLLTTGWSVFVSSKRLSAGDAVLFI--RDE 200 99**********************988888733333445566667777**************************************..456 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_024979344.1 201 KSQLLLGIRRA 211 77789999997 PP
2	Auxin_resp	121.7	5.4e-40	236	318	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++ +F++++nPras++eFv++++k++ka++++vs+GmRf+m+feteds rr++Gtv+g+sdldp rW+nS+WrsL+ XP_024979344.1 236 AAHAAANNRPFTIFFNPRASPAEFVIPLAKYNKAMYTQVSLGMRFRMMFETEDSGVRRYMGTVTGISDLDPARWKNSQWRSLQ 318 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1063 aa Download sequence
MNSELWHACA GPLVSLPPIA SLVVYFPQGH SEQVAXSMNK DTENIPSYPN LPSKLICMLH 60 NVALHADAET DEVYAQMTLQ PVNKVCQLEA LLISDMGLKQ NRQPAEFFCK TLTASDTSTH 120 GGFSVPRRAA EKIFPPXMLC XXXXXXXXXX XXXXXXXXXX TFRHIYRGQP KRHLLTTGWS 180 VFVSSKRLSA GDAVLFIRDE KSQLLLGIRR ANRQQPALSS SVISSDSMHI GILAAAAHAA 240 ANNRPFTIFF NPRASPAEFV IPLAKYNKAM YTQVSLGMRF RMMFETEDSG VRRYMGTVTG 300 ISDLDPARWK NSQWRSLQVG WDESTAGERP SRVSVWEIEP VVTPFYICPP PFFRQKFPRQ 360 PEDETDIENA YKRGIPWLDD FGMKDPSSSI FPGLSLVQWM SMQQNHGIPS MQSGVFPPIV 420 SSNSLNTEDP SKLLNFQSPN LFVPSSQLNK ANQTNQLVSQ LQQPSLQWTQ QQQQHLQHLL 480 HATNFNQHQP HLQPQQVQQQ QHMQHLQQQQ NSVYNQLQLQ QQQQQQQQQQ QQQQQEQQQQ 540 QQQQQQQQHQ PPLQHPNGQS QQNANSANRV LIQPSSVFQE SQFHHQLEQP SCILQRPQQT 600 QLQQAPFHSL QHNLSPRQQV QQAPQQSLSE QQQLFQKVQQ QQQQQQQLQQ RFSSVSRAEP 660 QLPLQQQLQQ THQSRQQSLS QQQLSGNSFS TSSLLQSPPF PANQVQSQPR QLMPIRVHSG 720 LTDVDAPSCS TSPSTNNCQL TPSNILNKNQ PGPYAFVNDS MVQFDQDLQS RSKSNIQVKQ 780 EVNNVKLPEP PKYKSIANEQ LELSTSVTSH SLDAGGLQQN FSIPNFCLDG DVIQPQTRNN 840 FPLAASIDTL PPDALLSRGF DSQNLLSSFC GAPRDVVTEL SSAEINPESF GMPDMSFKPG 900 CSNDVAVCVQ KNDVAVNDSG VLGNGLWGNQ AQRVRTYTKV QKRGSVGRTI DVTRYLGYEE 960 LRHDLARMFG IEGQLEDAQR TDWKLVYVDH ENDILLVGDD PWEEFVSCVQ SIKILSYSEV 1020 QQMSLDGDLG NMPAPNQAAS SGTDSGNPWK GQYEDNSAAS FNR

Sequence ? help Back to Top

Protein Sequence Length: 1063 aa Download sequence

MNSELWHACA GPLVSLPPIA SLVVYFPQGH SEQVAXSMNK DTENIPSYPN LPSKLICMLH  60
NVALHADAET DEVYAQMTLQ PVNKVCQLEA LLISDMGLKQ NRQPAEFFCK TLTASDTSTH  120
GGFSVPRRAA EKIFPPXMLC XXXXXXXXXX XXXXXXXXXX TFRHIYRGQP KRHLLTTGWS  180
VFVSSKRLSA GDAVLFIRDE KSQLLLGIRR ANRQQPALSS SVISSDSMHI GILAAAAHAA  240
ANNRPFTIFF NPRASPAEFV IPLAKYNKAM YTQVSLGMRF RMMFETEDSG VRRYMGTVTG  300
ISDLDPARWK NSQWRSLQVG WDESTAGERP SRVSVWEIEP VVTPFYICPP PFFRQKFPRQ  360
PEDETDIENA YKRGIPWLDD FGMKDPSSSI FPGLSLVQWM SMQQNHGIPS MQSGVFPPIV  420
SSNSLNTEDP SKLLNFQSPN LFVPSSQLNK ANQTNQLVSQ LQQPSLQWTQ QQQQHLQHLL  480
HATNFNQHQP HLQPQQVQQQ QHMQHLQQQQ NSVYNQLQLQ QQQQQQQQQQ QQQQQEQQQQ  540
QQQQQQQQHQ PPLQHPNGQS QQNANSANRV LIQPSSVFQE SQFHHQLEQP SCILQRPQQT  600
QLQQAPFHSL QHNLSPRQQV QQAPQQSLSE QQQLFQKVQQ QQQQQQQLQQ RFSSVSRAEP  660
QLPLQQQLQQ THQSRQQSLS QQQLSGNSFS TSSLLQSPPF PANQVQSQPR QLMPIRVHSG  720
LTDVDAPSCS TSPSTNNCQL TPSNILNKNQ PGPYAFVNDS MVQFDQDLQS RSKSNIQVKQ  780
EVNNVKLPEP PKYKSIANEQ LELSTSVTSH SLDAGGLQQN FSIPNFCLDG DVIQPQTRNN  840
FPLAASIDTL PPDALLSRGF DSQNLLSSFC GAPRDVVTEL SSAEINPESF GMPDMSFKPG  900
CSNDVAVCVQ KNDVAVNDSG VLGNGLWGNQ AQRVRTYTKV QKRGSVGRTI DVTRYLGYEE  960
LRHDLARMFG IEGQLEDAQR TDWKLVYVDH ENDILLVGDD PWEEFVSCVQ SIKILSYSEV  1020
QQMSLDGDLG NMPAPNQAAS SGTDSGNPWK GQYEDNSAAS FNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein