PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979366.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family YABBY
Protein Properties Length: 210aa    MW: 23333.2 Da    PI: 8.7671
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY226.47.7e-7081772170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkve.eenlksnvekeesasts 95 
                     dv  +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+ +a+    + s+ + + +++  ++++++  +++ sn+   +  s+s
  XP_024979366.1   8 DVAAASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMGMAAAFHQSLSNSNSTSQDSTSHQHGQQaPNHTASNYRV-DLGSSS 101
                     57789************************************************99999998888877776555555504555555444.433333 PP

           YABBY  96 vssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     + ++++  + +  +++  +++++PPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  XP_024979366.1 102 KYNSRMpMRPSPASITSEQKINHPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 177
                     333344134445556666789*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSSSSCIDVA AASEQLCYIP CNFCNIVLAV SVPCSSLFDI VTVRCGHCTN LWSVNMGMAA  60
AFHQSLSNSN STSQDSTSHQ HGQQAPNHTA SNYRVDLGSS SKYNSRMPMR PSPASITSEQ  120
KINHPPEKRQ RVPSAYNQFI KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE  180
ANNHQTKLDE LSCVQGSEKR LRSRAALFKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.13e-81YABBY family protein