PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979367.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family YABBY
Protein Properties Length: 209aa    MW: 23205.1 Da    PI: 8.7671
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY227.14.7e-7081762170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     dv  +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+ +a+    + s+ + + +++  ++++++ +++ sn+  +  +s++ 
  XP_024979367.1   8 DVAAASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMGMAAAFHQSLSNSNSTSQDSTSHQHGQAPNHTASNYRVDLGSSSKY 102
                     57789************************************************999999999999999999999999999888877665555555 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +s +  + +  +++  +++++PPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  XP_024979367.1 103 NSRMPMRPSPASITSEQKINHPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 176
                     5444344455566667889*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MSSSSCIDVA AASEQLCYIP CNFCNIVLAV SVPCSSLFDI VTVRCGHCTN LWSVNMGMAA  60
AFHQSLSNSN STSQDSTSHQ HGQAPNHTAS NYRVDLGSSS KYNSRMPMRP SPASITSEQK  120
INHPPEKRQR VPSAYNQFIK EEIQRIKANN PDISHREAFS TAAKNWAHFP HIHFGLMLEA  180
NNHQTKLDEL SCVQGSEKRL RSRAALFKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.12e-81YABBY family protein