PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979457.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 713aa MW: 80290.6 Da PI: 6.2303

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979457.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.8e-10	637	678	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++++ el+++a++q+G++ + I ++++ gRt++q+k ++ k XP_024979457.1 637 KWSKQDTELFYEAIQQFGTD-LSMIKECFP-GRTREQIKAKYKK 678 8*****************.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence
MNLNPKSALN TRISTTVFLT LFTSAVRWTG LHFTHQRRDF FNNSAWILIW MICFQLMLQT 60 MVYAFGFSFS LSLYSSSIDV LICHIYASMV GIIDLLTVAA KTSTKFQPKA KPKPKPKPKP 120 KIQLEQKSES IPLRQFVEDV AAANNEFTGR IVEEQPGNDV NQISGNINDD WQSSFEKSQE 180 VHGESFLTLE SLNDFPPQST IVTVNSPPCS NAPTGHVSID GNLEKGPIEP DLSYNIDSCT 240 NFESPAQLDP LTGEEAAIFN DNGDFQIGNL SGPKDAESSQ FWESLDILSH SKTCSGPRVG 300 KFKPKPKAQT RKPEQIVTSP DKDLASVQYE ENVHSVSSQT NYMQNKDVPS FTEDDILGSA 360 SVRVTDSAPT ETIFDFHVNE ESMNLADQMD SVIPEEHLDA VTESPSAGPE SVKKGKRKTR 420 KGLNPTQLDN SPESSLENQV GTSSERLRRR SNKTLEPIDE SDDEGIDDGF VHGNEDSGDY 480 EPGSEYLDEK KGSKSKKPVN EKERPIRKRK KANEVPAEST KVAKKKFPHR TRRNKRQVNP 540 DLLKMTEDEL EMHMHTVPMK ELIRLAEHRE RLAKKEASTS GTPARNQSAS SFSNNYDEDE 600 AFAQGTGSAY EHDYSMEAEN ATYYNYRTHM KITPRIKWSK QDTELFYEAI QQFGTDLSMI 660 KECFPGRTRE QIKAKYKKEE RQQPLRLSDA LTTRAKGWFG CNKTCRVTKR SGN

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence

MNLNPKSALN TRISTTVFLT LFTSAVRWTG LHFTHQRRDF FNNSAWILIW MICFQLMLQT  60
MVYAFGFSFS LSLYSSSIDV LICHIYASMV GIIDLLTVAA KTSTKFQPKA KPKPKPKPKP  120
KIQLEQKSES IPLRQFVEDV AAANNEFTGR IVEEQPGNDV NQISGNINDD WQSSFEKSQE  180
VHGESFLTLE SLNDFPPQST IVTVNSPPCS NAPTGHVSID GNLEKGPIEP DLSYNIDSCT  240
NFESPAQLDP LTGEEAAIFN DNGDFQIGNL SGPKDAESSQ FWESLDILSH SKTCSGPRVG  300
KFKPKPKAQT RKPEQIVTSP DKDLASVQYE ENVHSVSSQT NYMQNKDVPS FTEDDILGSA  360
SVRVTDSAPT ETIFDFHVNE ESMNLADQMD SVIPEEHLDA VTESPSAGPE SVKKGKRKTR  420
KGLNPTQLDN SPESSLENQV GTSSERLRRR SNKTLEPIDE SDDEGIDDGF VHGNEDSGDY  480
EPGSEYLDEK KGSKSKKPVN EKERPIRKRK KANEVPAEST KVAKKKFPHR TRRNKRQVNP  540
DLLKMTEDEL EMHMHTVPMK ELIRLAEHRE RLAKKEASTS GTPARNQSAS SFSNNYDEDE  600
AFAQGTGSAY EHDYSMEAEN ATYYNYRTHM KITPRIKWSK QDTELFYEAI QQFGTDLSMI  660
KECFPGRTRE QIKAKYKKEE RQQPLRLSDA LTTRAKGWFG CNKTCRVTKR SGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	413	421	KKGKRKTRK
2	507	511	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	2e-40	MYB_related family protein