PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979541.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 236aa MW: 27253.1 Da PI: 6.2837

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979541.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.3	6.2e-12	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l+ + +G Wk+++ + g+ R +k+c++rw +yl XP_024979541.1 15 KGLWSPDEDLKLKSFIINHGRVAWKSVPIYAGLQRDGKSCRLRWINYL 62 678***************88**********************97 PP
2	Myb_DNA-binding	54	3.9e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ ++ +++ lG++ W++I+++++ gRt++++k++w++yl XP_024979541.1 68 RGPFSSQEEKTILTLHASLGNK-WSRISQHLP-GRTDNEIKNHWHSYL 113 89******************.*****.**********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MRPKPSETPQ ANNKKGLWSP DEDLKLKSFI INHGRVAWKS VPIYAGLQRD GKSCRLRWIN 60 YLRPGLKRGP FSSQEEKTIL TLHASLGNKW SRISQHLPGR TDNEIKNHWH SYLKKRLAKP 120 DAPPELENHT NSSLSADITN SSFTDMDQSV PLVSHVSRLS VDWTSQDQEF QQDFDRSTDH 180 LSHGYQHNEG SRDNSETQNY LNDGSNEDMF DTQIANDQIF DFHVEDFNID DILMYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	6e-59	MYB family protein