PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979557.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 624aa MW: 69186 Da PI: 5.8991

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.5e-09	501	549	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r +Rt+ ++k++w+++l XP_024979557.1 501 PWTLSEVVKLVEGVSRYGAGRWSEIKRISFatcSHRTAVDLKDKWRNLL 549 8**********************999989999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
METVVAVEES EKTRLEGTSA IVITCSDSSK QIADPVVYKL ARVEGDGRLV PATDDEVMEV 60 EDLLDDKNSV HFVLDTGQTA VCTSNEDTFA QEFMPIDCEG ILKFEDPSTQ GGRSDGLVDT 120 TVDLGKLNSQ YEEIAPSRST PVGEQIDQSG DRKQAELPLG SAESEPSTST MCASWKPDFS 180 KLKGEICLDN LSVRELHATF KATFGRETSV KDKQWLKRRI SMGLSNSCDV STTTFIIEND 240 KVKKKGKVED CNNKDEDYEE DHFAGSGGRN VSGDDISVSH TIQMDDHFSG SSKSVQSATS 300 KLHIASEDDH QGAKRVRKPT KRYIEEVSEL DCREYSGRLV SSVKSSGHGP RTRVRPIHNI 360 QPVRRPLVTR HDSLGGSGVQ IPYVSRIRRG RPRENFMALM KFQSCGMGMA ARLVKKAHDG 420 HDPQSDNEIE NQELKARPVT GWIQQPLIEE PGENQQYSEQ SADLNDDVDE GHMDSYADDS 480 DDNILTVPTA KGGMRRKHHR PWTLSEVVKL VEGVSRYGAG RWSEIKRISF ATCSHRTAVD 540 LKDKWRNLLR ASFAQLPAEK GVGNSKKQSS SIPIPAPILL RVRELAEMQS QVSPDLKSVK 600 YNNNNNNSGS TRNNNVNDIR SGFL

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

METVVAVEES EKTRLEGTSA IVITCSDSSK QIADPVVYKL ARVEGDGRLV PATDDEVMEV  60
EDLLDDKNSV HFVLDTGQTA VCTSNEDTFA QEFMPIDCEG ILKFEDPSTQ GGRSDGLVDT  120
TVDLGKLNSQ YEEIAPSRST PVGEQIDQSG DRKQAELPLG SAESEPSTST MCASWKPDFS  180
KLKGEICLDN LSVRELHATF KATFGRETSV KDKQWLKRRI SMGLSNSCDV STTTFIIEND  240
KVKKKGKVED CNNKDEDYEE DHFAGSGGRN VSGDDISVSH TIQMDDHFSG SSKSVQSATS  300
KLHIASEDDH QGAKRVRKPT KRYIEEVSEL DCREYSGRLV SSVKSSGHGP RTRVRPIHNI  360
QPVRRPLVTR HDSLGGSGVQ IPYVSRIRRG RPRENFMALM KFQSCGMGMA ARLVKKAHDG  420
HDPQSDNEIE NQELKARPVT GWIQQPLIEE PGENQQYSEQ SADLNDDVDE GHMDSYADDS  480
DDNILTVPTA KGGMRRKHHR PWTLSEVVKL VEGVSRYGAG RWSEIKRISF ATCSHRTAVD  540
LKDKWRNLLR ASFAQLPAEK GVGNSKKQSS SIPIPAPILL RVRELAEMQS QVSPDLKSVK  600
YNNNNNNSGS TRNNNVNDIR SGFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-101	MYB_related family protein