PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979558.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 622aa MW: 68910.6 Da PI: 5.7841

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.4e-09	498	546	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r +Rt+ ++k++w+++l XP_024979558.1 498 PWTLSEVVKLVEGVSRYGAGRWSEIKRISFatcSHRTAVDLKDKWRNLL 546 8**********************999989999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
METVVAVEES EKTRLEGTSA IVITCSDSSK QIADPVVYKL ARVEGDGRLV PATDDEVMEV 60 EDLLDDKNSV HFVLDTGQTA VCTSNEDTFA QEFMPIDCEG ILKFEDPSTQ GGRSDGLVDT 120 TVDLGKLNSQ YEEIAPSRST PVGEQIDQSG DRKQAELPLG SAESEPSTST MCASWKPDFS 180 KLKGEICLDN LSVRELHATF KATFGRETSV KDKQWLKRRI SMGLSNSCDV STTTFIIEND 240 KVKKKGKVED CNNKDEDYEE DHFAGSGGRN VSGDDISVSH TIQMDDHFSG SSKSVQSATS 300 KLHIASEDDH QGAKRVRKPT KRYIEEVSEL DCREYSGRLV SSVKSSGHGP RTRVRPIHNI 360 QPVRRPLVTR HDSLGGSGVQ IPYVSRIRRG RPRENFMALM SCGMGMAARL VKKAHDGHDP 420 QSDNEIENQE LKARPVTGWI QQPLIEEPGE NQQYSEQSAD LNDDVDEGHM DSYADDSDDN 480 ILTVPTAKGG MRRKHHRPWT LSEVVKLVEG VSRYGAGRWS EIKRISFATC SHRTAVDLKD 540 KWRNLLRASF AQLPAEKGQV GNSKKQSSSI PIPAPILLRV RELAEMQSQV SPDLKSVKYN 600 NNNNNSGSTR NNNVNDIRSG FL

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

METVVAVEES EKTRLEGTSA IVITCSDSSK QIADPVVYKL ARVEGDGRLV PATDDEVMEV  60
EDLLDDKNSV HFVLDTGQTA VCTSNEDTFA QEFMPIDCEG ILKFEDPSTQ GGRSDGLVDT  120
TVDLGKLNSQ YEEIAPSRST PVGEQIDQSG DRKQAELPLG SAESEPSTST MCASWKPDFS  180
KLKGEICLDN LSVRELHATF KATFGRETSV KDKQWLKRRI SMGLSNSCDV STTTFIIEND  240
KVKKKGKVED CNNKDEDYEE DHFAGSGGRN VSGDDISVSH TIQMDDHFSG SSKSVQSATS  300
KLHIASEDDH QGAKRVRKPT KRYIEEVSEL DCREYSGRLV SSVKSSGHGP RTRVRPIHNI  360
QPVRRPLVTR HDSLGGSGVQ IPYVSRIRRG RPRENFMALM SCGMGMAARL VKKAHDGHDP  420
QSDNEIENQE LKARPVTGWI QQPLIEEPGE NQQYSEQSAD LNDDVDEGHM DSYADDSDDN  480
ILTVPTAKGG MRRKHHRPWT LSEVVKLVEG VSRYGAGRWS EIKRISFATC SHRTAVDLKD  540
KWRNLLRASF AQLPAEKGQV GNSKKQSSSI PIPAPILLRV RELAEMQSQV SPDLKSVKYN  600
NNNNNSGSTR NNNVNDIRSG FL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-101	MYB_related family protein