PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979574.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 356aa    MW: 39183.8 Da    PI: 8.3095
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-18183231355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++GVr+++ +g+WvAeIr p++   r+r++lg+f taeeAa a++ a+  l+g
  XP_024979574.1 183 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEEAAFAYDTAAYLLRG 231
                     8******9.**********955...5**********************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MENHLFPKME TFLPSCFQQT GTQVVENPNI WNDLDELSCH GGSRSSSSSV SSSSSSSSPL  60
KRLLLTSDGL TCSNDPTFPL NFLQTLSQAS EPSSTPSLTN TSRFPNLSLL LNEPKFATSL  120
QPGTGWLGIN QNLANHPSKG FSGDYWLKTS KTQPMKYTGR RGPDTTFKRT SFSTSVCSPA  180
KLFRGVRQRH WGKWVAEIRL PRNRTRVWLG TFETAEEAAF AYDTAAYLLR GDYAHLNFPN  240
LKNQLKANSI NRNTAALLEA KLQALSQGMS SEGNNNKKGN DLSSPLPEMA LSETSMVGNY  300
TDYESNNKSR SEVSNGISKK PVEAGPPSDF VEGVQLSRMP SLDMDMIWDA LLVSDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-60ERF family protein