PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979646.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 329aa MW: 37406.5 Da PI: 5.8447

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.4	2.7e-13	151	198	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f+ L llP+ kK++Ka++Le A +YI++Lq XP_024979646.1 151 QEHVLAERKRREKLTQRFFSLSALLPEI-----KKMDKATVLEDASRYIQHLQ 198 67999********************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MDIPSGAWLP ELEMDDPLDF MYQHQSTCPY SELMDSFSSK GFKGHLNLAT RNQSIQAATI 60 NGDMGKQENY NAYPTSSFDP ICGSSSNSFT ISFGDLDLPA EMSQDQLYGG YKLKYHDAIK 120 PKEEMSLNEL LGSIELPKRV SSTRRNPRQA QEHVLAERKR REKLTQRFFS LSALLPEIKK 180 MDKATVLEDA SRYIQHLQNQ VKDLEETSIK KRSEFHACGL EDDASSFDET NSLLCSSDYN 240 PGIRVRISGK NILVRIYCRR NSSPALMKAL IEMERLHFTV MCNSVLHISD TASLITIIAQ 300 MNEEFVMAAI DLVKCLQSYL SSFLYYDMH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	162	ERKRRE
2	158	163	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-39	bHLH family protein