PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979653.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YC
Protein Properties Length: 249aa    MW: 28062.7 Da    PI: 5.5535
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.33.5e-56731761101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_024979653.1  73 QLQNFWANQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 167
                     89******9999*********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  XP_024979653.1 168 VDIVPREDL 176
                     ******987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MDQQGHGQGP GMGAVGYSMA MAPYPPNQMM SASVQPSSQT SGPGLPSPPA QLAQQQLAYQ  60
HIHQQQQQQL HQQLQNFWAN QYQEIEQTTD FKNHSLPLAR IKKIMKADED VRMISAEAPV  120
IFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPREDLKDEV  180
IASRGGGPLP PTEGLPYYYM PPPPPQVGAS GMYMGKPVDP QALYGQQPRP YTMWPQHQQQ  240
QQQEPQEDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.35e-71NF-YC family protein