PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979827.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 404aa MW: 44907.5 Da PI: 6.8594

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.1e-32	261	316	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rFv+a++qLGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ XP_024979827.1 261 KQRRCWSTELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 316 79****************************************************97 PP
2	Myb_DNA-binding	45.7	1.5e-14	263	314	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W+te++ ++v+a +qlGg t+k I + m+ g+t ++ks++qky+ XP_024979827.1 263 RRCWSTELHRRFVNALQQLGGSqaaTPKQIRELMQvDGLTNDEVKSHLQKYR 314 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MGSLNPPPQL SLDFKPTFIP KTITQFLGQV SRIGSPSDKI LKVDDFVSRL ETEMRKIDAF 60 KRELPLCMLL INDAIIVLKE ESMVLKKSSN AEPVLEEFIP LKKTCDEDEQ LEMNGKEKGA 120 GDKRNWLSST QLWNTNDNTP NTNQTQNWKP NSIQQITKKR PLEEDDPYEP CRNPGRAFIP 180 FKGCCAITMV GTPREEDREE LQVSGLSLIT PGSKNPVRGN VLLSKSSADS RLVPCSAPNS 240 QSNLRIDGPQ VQPPHQQTSR KQRRCWSTEL HRRFVNALQQ LGGSQAATPK QIRELMQVDG 300 LTNDEVKSHL QKYRLHTRRL PSSNTSSANQ SGVVLGGGLW MGGQDQYVES SKHGNISQSG 360 SPDGPLLIST IGGTSTTGDN SMDDGEDEKS ENYCWKGHLH TDDV

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MGSLNPPPQL SLDFKPTFIP KTITQFLGQV SRIGSPSDKI LKVDDFVSRL ETEMRKIDAF  60
KRELPLCMLL INDAIIVLKE ESMVLKKSSN AEPVLEEFIP LKKTCDEDEQ LEMNGKEKGA  120
GDKRNWLSST QLWNTNDNTP NTNQTQNWKP NSIQQITKKR PLEEDDPYEP CRNPGRAFIP  180
FKGCCAITMV GTPREEDREE LQVSGLSLIT PGSKNPVRGN VLLSKSSADS RLVPCSAPNS  240
QSNLRIDGPQ VQPPHQQTSR KQRRCWSTEL HRRFVNALQQ LGGSQAATPK QIRELMQVDG  300
LTNDEVKSHL QKYRLHTRRL PSSNTSSANQ SGVVLGGGLW MGGQDQYVES SKHGNISQSG  360
SPDGPLLIST IGGTSTTGDN SMDDGEDEKS ENYCWKGHLH TDDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	3e-51	G2-like family protein