PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979828.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 356aa MW: 40006.9 Da PI: 6.1875

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.7e-32	213	268	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rFv+a++qLGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ XP_024979828.1 213 KQRRCWSTELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 268 79****************************************************97 PP
2	Myb_DNA-binding	46	1.2e-14	215	266	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W+te++ ++v+a +qlGg t+k I + m+ g+t ++ks++qky+ XP_024979828.1 215 RRCWSTELHRRFVNALQQLGGSqaaTPKQIRELMQvDGLTNDEVKSHLQKYR 266 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGSLNPPPQL SLDFKPTFIP KTITQFLGQV SRIGSPSDKI LKVDDFVSRL ETEMRKIDAF 60 KRELPLCMLL INDAIIVLKE ESMVLKKSSN AEPVLEEFIP LKKTCDEDEQ LEMNGKEKGA 120 GDKRNWLSST QLWNTNDNTP NTNQTQNWKP NSIQQITKKR PLEEDDPYEP CRNPGRAFIP 180 FKGCCAITMV GTPREEDREE LQVQPPHQQT SRKQRRCWST ELHRRFVNAL QQLGGSQAAT 240 PKQIRELMQV DGLTNDEVKS HLQKYRLHTR RLPSSNTSSA NQSGVVLGGG LWMGGQDQYV 300 ESSKHGNISQ SGSPDGPLLI STIGGTSTTG DNSMDDGEDE KSENYCWKGH LHTDDV

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGSLNPPPQL SLDFKPTFIP KTITQFLGQV SRIGSPSDKI LKVDDFVSRL ETEMRKIDAF  60
KRELPLCMLL INDAIIVLKE ESMVLKKSSN AEPVLEEFIP LKKTCDEDEQ LEMNGKEKGA  120
GDKRNWLSST QLWNTNDNTP NTNQTQNWKP NSIQQITKKR PLEEDDPYEP CRNPGRAFIP  180
FKGCCAITMV GTPREEDREE LQVQPPHQQT SRKQRRCWST ELHRRFVNAL QQLGGSQAAT  240
PKQIRELMQV DGLTNDEVKS HLQKYRLHTR RLPSSNTSSA NQSGVVLGGG LWMGGQDQYV  300
ESSKHGNISQ SGSPDGPLLI STIGGTSTTG DNSMDDGEDE KSENYCWKGH LHTDDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	3e-51	G2-like family protein