PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979882.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 494aa    MW: 55880.7 Da    PI: 6.694
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.36.4e-1281414941374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+e+L++cA+avs+++ + a+ l+++l++++s +g+p+qRl ay++e+L arl+ s+s+++     +e +   s++ l+++++++e++P++kf++
  XP_024979882.1 141 LKEVLIACANAVSNNEVSTARFLISELQQMVSVAGEPIQRLGAYMLEGLVARLSCSGSSIC-----KEPA---SDDLLSYTNILYEICPYFKFGY 227
                     5789**************************************************9777777.....4444...789999**************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     + aN aI ea++ e+r+HiiDf i qG QW++L+qa+a+Rp+gpp++RiTg+++    s+ +l+ +g+rL k+A++ +vpfef++       ++ 
  XP_024979882.1 228 MSANGAIAEAMKDEKRIHIIDFRIVQGSQWVPLIQAFAKRPGGPPHIRITGFHD----STSKLHIVGKRLCKLAKAYNVPFEFHT-------EVG 311
                     ******************************************************....99************************9.......899 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e++r +pgE+laVn+++ lhr++desvs++++rd+vL+lvks++Pkvv++veqe+++n+++F  rflealeyy a+f+s++ +lpr++++ri+v
  XP_024979882.1 312 IESFRAQPGESLAVNFAFVLHRMPDESVSTQNHRDRVLRLVKSMNPKVVTLVEQESNTNTAPFYPRFLEALEYYHAMFESIDITLPRQHKKRINV 406
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+++l+r++vn++aceg+er+erhe l+kW+ r+++aGF+p p+s  ++ ++k+ll++++++ yrvee++g+l+lgW++r Lv+ +aW+
  XP_024979882.1 407 EQHCLARDVVNIIACEGNERVERHELLGKWKLRFSMAGFSPSPMSPVVNGTIKRLLNNYSER-YRVEERDGALYLGWMNRDLVASCAWK 494
                     ************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    
MQASRNDRPA MSNTWYYQST QEYEVLCKPQ FQALDSISHG SNLYIKSEPY CPLDSSSASG  60
SCTTIFNSPN GHESRSPVTE SCVTDDLNEF RNKLRQLESV MLSDLYEDAE NGKLLVGNGI  120
VELPDIEIWK EMVEGVPKRD LKEVLIACAN AVSNNEVSTA RFLISELQQM VSVAGEPIQR  180
LGAYMLEGLV ARLSCSGSSI CKEPASDDLL SYTNILYEIC PYFKFGYMSA NGAIAEAMKD  240
EKRIHIIDFR IVQGSQWVPL IQAFAKRPGG PPHIRITGFH DSTSKLHIVG KRLCKLAKAY  300
NVPFEFHTEV GIESFRAQPG ESLAVNFAFV LHRMPDESVS TQNHRDRVLR LVKSMNPKVV  360
TLVEQESNTN TAPFYPRFLE ALEYYHAMFE SIDITLPRQH KKRINVEQHC LARDVVNIIA  420
CEGNERVERH ELLGKWKLRF SMAGFSPSPM SPVVNGTIKR LLNNYSERYR VEERDGALYL  480
GWMNRDLVAS CAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein