PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979894.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 220aa    MW: 24747.9 Da    PI: 5.3549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13135182455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i+++++ L++l+P +    +k  +Ka+iL + + Y++ Lq
  XP_024979894.1 135 SHSLAERARREKIKKKMQDLQDLVPGC----NKITNKAAILDEIITYVQCLQ 182
                     8**************************....999***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MPEILQILHQ SPPSRHQMPP HLQRGLVNVE SQFNWLIDSA FPSPGIFDVT DHFQWSEFDG  60
SPFTDLSSSS IDELSKVTAI NDQNQSAKKR KLEFDVVEVK AEKHIDELEG DSKPKIDPKA  120
DYIHVRARRG QATDSHSLAE RARREKIKKK MQDLQDLVPG CNKITNKAAI LDEIITYVQC  180
LQREVEFLTM KLAASTTSVD FNSLPEQQPD ASGGELSLPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188115KKRKLEFDVVEVKAEKHIDELEGDSKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-35bHLH family protein