PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979995.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 452aa MW: 49557.2 Da PI: 6.6974

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.6	6.2e-29	170	226	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK vkg++f rsYY+Ctsa+Cp++k+vers+ d++++ei Y +H+h+k XP_024979995.1 170 DGYNWRKYGQKLVKGNTFVRSYYKCTSANCPARKQVERSH-DGHITEINYLWKHEHPK 226 9*************************************.*************85 PP
2	WRKY	105.6	2.5e-33	344	402	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+ver+++d+kvv++tYeg+H+h+ XP_024979995.1 344 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSAGCPAKKHVERASHDEKVVITTYEGRHDHD 402 58********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MMDKPSDTLE LTNDTDSRNQ TSLSNRERNS ESIIVKELHD MHQRQSPDGG IHVSHSNQER 60 SSTSVILDKE SDSQNYRQDL HTGCAVSESD QEGSALPVVP KKVSNTSQQT PPGAGVPASK 120 PDQENAIVVL RPEKGLDKLP LRRNADSVSH ASHSDQGISF SKLPEKPTGD GYNWRKYGQK 180 LVKGNTFVRS YYKCTSANCP ARKQVERSHD GHITEINYLW KHEHPKPNTL QKGSGFVLPV 240 QSKGSDDPSL TTSEDHSSVH PATSHDPEAS ETDTLQLSVV PPSENSVEVA ASQSNEIKNE 300 VNNDISSDSK RQKRENSSIN EGVSTKTNCE PRVVVQITSA VDIVNDGYRW RKYGQKLVKG 360 NPNPRSYYRC SSAGCPAKKH VERASHDEKV VITTYEGRHD HDMPAGGRAA TQNIPGTATG 420 TTTSMDNNDG SRPQPEAQES NGMEMVLNVS AT

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MMDKPSDTLE LTNDTDSRNQ TSLSNRERNS ESIIVKELHD MHQRQSPDGG IHVSHSNQER  60
SSTSVILDKE SDSQNYRQDL HTGCAVSESD QEGSALPVVP KKVSNTSQQT PPGAGVPASK  120
PDQENAIVVL RPEKGLDKLP LRRNADSVSH ASHSDQGISF SKLPEKPTGD GYNWRKYGQK  180
LVKGNTFVRS YYKCTSANCP ARKQVERSHD GHITEINYLW KHEHPKPNTL QKGSGFVLPV  240
QSKGSDDPSL TTSEDHSSVH PATSHDPEAS ETDTLQLSVV PPSENSVEVA ASQSNEIKNE  300
VNNDISSDSK RQKRENSSIN EGVSTKTNCE PRVVVQITSA VDIVNDGYRW RKYGQKLVKG  360
NPNPRSYYRC SSAGCPAKKH VERASHDEKV VITTYEGRHD HDMPAGGRAA TQNIPGTATG  420
TTTSMDNNDG SRPQPEAQES NGMEMVLNVS AT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-67	WRKY family protein