PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979997.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 251aa MW: 28807.4 Da PI: 4.5394

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.7e-14	62	105	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI++L+ XP_024979997.1 62 VSERNRRKKLNDRLFALRAVVPNiS------KMDKASIIKDAIDYIQHLH 105 57*******************66......***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MEDIGDEYKN IGDEYKNYWE TNMFLQTEEF DSWGGLEETF SGYYDSSSPD GPQSSAASKN 60 IVSERNRRKK LNDRLFALRA VVPNISKMDK ASIIKDAIDY IQHLHDQERI IQGDIMELES 120 RKSESDVFDF DQEAEFMSYE RLKKKKIEQS PDSSESRASP VEILELKVSY VGEKTVLVSL 180 KCRKRRDTMV KICEVFESLK LNVVTANITA FSETIFKTLF LQADEEEIDL LKIQIHSAIS 240 AINDPPSPMS T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	ERLKKKK
2	180	186	LKCRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	1e-85	bHLH family protein