PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980084.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 233aa    MW: 25918.4 Da    PI: 6.9997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-203181155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+ +l+g
  XP_024980084.1 31 PRYRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDSAEDAARAYDAAAVSLRG 81
                    68********.**********883....5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MARGSRTKAA AGGAIGTRET VMGQQHDDNE PRYRGVRKRP WGRFAAEIRD PWKKARVWLG  60
TFDSAEDAAR AYDAAAVSLR GPKAKTNFPS LALRLHETAD HGTIDHTHHH HHHHQRSFYE  120
FQHFNTNQSR PTTSNLSSTV ESTSGPRPSN PPRERTQQPL KPSQFPPMDD DCHSNCDSSS  180
SVVDDYYCDA DLSSSSRKPL PFDLNLPPPL ADVGFSSNPI DDSDDLFVTA LCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-27ERF family protein