PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980176.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GATA
Protein Properties Length: 349aa    MW: 39220.7 Da    PI: 8.1568
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19187220134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  XP_024980176.1 187 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 220
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MQMTPIFLNS SSNHYWPTDL HHQDDHFSHS NQEFLSPNSQ ASSSSNSLTT HMFLNSTVVH  60
RENGVSDTEL QPLQPQHEDD NFGSQVYEDD RIENNYEKNH EFPTWNKSEM NDMINKDQNQ  120
MKWMSSKMRV MLKMKKSDPV NPNAYRSTTR EATTLEDQKL PNSPIDQETE NSSNSTTSNN  180
SVPIRVCSDC NTTKTPLWRS GPRGPKSLCN ACGIRQRKAR RALAAAAAAS AENGNGNVSM  240
DQSIMVPLKV TKTPHKEHKK PSNGHVTKYK KRQYTKQIIT IPTPSPSPSP SPLPSSSPPS  300
SSSPVRKNCV EEFLESLSKN LTLYRVFPQD EKEAAILLMA LSCGYAHEI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.19e-24GATA family protein