PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980218.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARR-B

Protein Properties

Length: 628aa MW: 68344.6 Da PI: 6.2541

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980218.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.5	7.1e-29	202	255	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ +LH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl XP_024980218.1 202 KPRVVWSIDLHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 255 79*****************.******************************8 PP
2	Myb_DNA-binding	36.1	1.5e-11	204	254	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ +++ ++v av+qlG + +k+I m+ +g+t++++ s++qky+ XP_024980218.1 204 RVVWSIDLHRKFVAAVNQLGIEkaVPKRILDLMNvEGLTRENVASHLQKYR 254 678***********************************************7 PP
3	Response_reg	76.7	8.1e-26	25	133	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ ++ll +l+k +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++++++++++ + + G XP_024980218.1 25 VLAVDDDPTCLKLLDGLLRKCQY-QVTTTNQAITALKMLRENRnrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNSDPKLVMKGITHG 117 799******************.***********999889***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l+Kp+ eel++ XP_024980218.1 118 ACDYLVKPVRLEELRN 133 ************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MTVEEIRGSV GVSNEIDRFP IGMRVLAVDD DPTCLKLLDG LLRKCQYQVT TTNQAITALK 60 MLRENRNRFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSGNSDPKLV MKGITHGACD 120 YLVKPVRLEE LRNIWQHVIR RKVESKSQSK SNNQEKPNQG GEGGQEAGSG DPNGKLNRKR 180 KDEDEDVEDN GNEDDDPSSQ KKPRVVWSID LHRKFVAAVN QLGIEKAVPK RILDLMNVEG 240 LTRENVASHL QKYRLYLKRI SQQANMVVAF GGSKDASSYM RMSSLDGLGD FRTLSGSGRL 300 PNAALSSYSP SGMLGRLNSA TGVTLHSLTS PSMIQPTHPQ NLTNSIGSLT KFQPVVLPTP 360 PNHQNTNLFQ GIPSSFDLGH LHQNGNKPNT TQIPDFNPID ESRIFTGPSS FATLGSQSSL 420 KMASMSSESF NLVSSSSSYL DVPPPMGENF HDQLPPNSSL KYGYSASSNT IPSFGSNITS 480 TASVPLEAQG QRHGQYGKPS YSPYSNNAFS TLAAAAAAPP PNGGGLGGPV SQANDQICGV 540 YNRSNGNGAT AMQRSSRETE RSSTELKMGS GEEYLLEQTK LPSGFVANNG YDSLDDLMNG 600 MMKREQDPTI MMDGEFGFDP YSFGSCIQ

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MTVEEIRGSV GVSNEIDRFP IGMRVLAVDD DPTCLKLLDG LLRKCQYQVT TTNQAITALK  60
MLRENRNRFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSGNSDPKLV MKGITHGACD  120
YLVKPVRLEE LRNIWQHVIR RKVESKSQSK SNNQEKPNQG GEGGQEAGSG DPNGKLNRKR  180
KDEDEDVEDN GNEDDDPSSQ KKPRVVWSID LHRKFVAAVN QLGIEKAVPK RILDLMNVEG  240
LTRENVASHL QKYRLYLKRI SQQANMVVAF GGSKDASSYM RMSSLDGLGD FRTLSGSGRL  300
PNAALSSYSP SGMLGRLNSA TGVTLHSLTS PSMIQPTHPQ NLTNSIGSLT KFQPVVLPTP  360
PNHQNTNLFQ GIPSSFDLGH LHQNGNKPNT TQIPDFNPID ESRIFTGPSS FATLGSQSSL  420
KMASMSSESF NLVSSSSSYL DVPPPMGENF HDQLPPNSSL KYGYSASSNT IPSFGSNITS  480
TASVPLEAQG QRHGQYGKPS YSPYSNNAFS TLAAAAAAPP PNGGGLGGPV SQANDQICGV  540
YNRSNGNGAT AMQRSSRETE RSSTELKMGS GEEYLLEQTK LPSGFVANNG YDSLDDLMNG  600
MMKREQDPTI MMDGEFGFDP YSFGSCIQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-120	ARR-B family protein