PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980264.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 188aa    MW: 21788.6 Da    PI: 7.1302
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.71.7e-201259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde+l++a++ +G++ W++Ia++ g+ R++k+c++rw++yl
   XP_024980264.1 12 RGAWTAEEDEKLAEAIQIHGPKKWTAIAAKAGLQRCGKSCRLRWLNYL 59
                     89********************************************97 PP
2Myb_DNA-binding51.62.2e-1665110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_024980264.1  65 RGNISDQEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 110
                      78999*****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MENKSTKKEI NRGAWTAEED EKLAEAIQIH GPKKWTAIAA KAGLQRCGKS CRLRWLNYLR  60
PNIKRGNISD QEEDLIIRLH KLLGNRWSLI AGRLPGRTDN EIKNYWNSHL SKKKEIMEKQ  120
TGHYSTREGS KLAEMKEEDH ITPIDEHGVE CSKVIFNVDE FFDFSNEDPT TLDWVNRYLA  180
DTDSVFLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.11e-54MYB family protein